HL_8VVV_105

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUCAUAAGC

Length

9 nucleotides

Bulged bases

8VVV|1|9|C|1660, 8VVV|1|9|G|1665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVV_105 not in the Motif Atlas

Geometric match to HL_8CRE_224

Geometric discrepancy: 0.2829

The information below is about HL_8CRE_224

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_61418.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

8VVV|1|9|G|1658
8VVV|1|9|U|1659
8VVV|1|9|C|1660
8VVV|1|9|A|1661
8VVV|1|9|U|1662
8VVV|1|9|A|1663
8VVV|1|9|A|1664
8VVV|1|9|G|1665
8VVV|1|9|C|1666

Current chains

Chain 9

18S rRNA

Nearby chains

Chain QQ

uS9

Chain TT

eS19

Chain UU

uS10

Chain dd

uS14