HL_8W2N_006

3D structure

PDB id

8W2N (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon and Elongation Factor P bound (uL1 in the open conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

8W2N|1|1|A|196, 8W2N|1|1|A|199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8W2N_006 not in the Motif Atlas

Geometric match to HL_7A0S_006

Geometric discrepancy: 0.0892

The information below is about HL_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8W2N|1|1|G|194
8W2N|1|1|A|195
8W2N|1|1|A|196
8W2N|1|1|A|197
8W2N|1|1|C|198
8W2N|1|1|A|199
8W2N|1|1|U|200
8W2N|1|1|C|201

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L15

Chain X

50S ribosomal protein L28