HL_8W2N_101
3D structure
- PDB id
- 8W2N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon and Elongation Factor P bound (uL1 in the open conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CAGCCUGGUAG
- Length
- 11 nucleotides
- Bulged bases
- 8W2N|1|5|G|18, 8W2N|1|5|G|19, 8W2N|1|5|U|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8W2N_101 not in the Motif Atlas
- Geometric match to HL_5E81_211
- Geometric discrepancy: 0.1705
- The information below is about HL_5E81_211
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_93616.2
- Basepair signature
- cWW-cWS-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
8W2N|1|5|C|13
8W2N|1|5|A|14
8W2N|1|5|G|15
8W2N|1|5|C|16
8W2N|1|5|C|17
8W2N|1|5|U|17|||A
8W2N|1|5|G|18
8W2N|1|5|G|19
8W2N|1|5|U|20
8W2N|1|5|A|21
8W2N|1|5|G|22
Current chains
- Chain 5
- tRNA^ProL (GGG)
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain 6
- Elongation factor P
- Chain E
- 50S ribosomal protein L5
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