HL_8WHX_069

3D structure

PDB id

8WHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

8WHX|1|A|G|2975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WHX_069 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.1353

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

8WHX|1|A|C|2969
8WHX|1|A|U|2970
8WHX|1|A|G|2971
8WHX|1|A|A|2972
8WHX|1|A|A|2973
8WHX|1|A|A|2974
8WHX|1|A|G|2975
8WHX|1|A|C|2976
8WHX|1|A|A|2977
8WHX|1|A|U|2978
8WHX|1|A|C|2979
8WHX|1|A|U|2980
8WHX|1|A|A|2981
8WHX|1|A|A|2982
8WHX|1|A|G|2983

Current chains

Chain A

23S rRNA

Nearby chains

Chain I

50S ribosomal protein L6