HL_8WHX_080
3D structure
- PDB id
- 8WHX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GGUGAUGGC
- Length
- 9 nucleotides
- Bulged bases
- 8WHX|1|a|G|266
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8WHX_080 not in the Motif Atlas
- Homologous match to HL_4LFB_006
- Geometric discrepancy: 0.1096
- The information below is about HL_4LFB_006
- Detailed Annotation
- GNRA related
- Broad Annotation
- GNRA related
- Motif group
- HL_84299.4
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
8WHX|1|a|G|259
8WHX|1|a|G|260
8WHX|1|a|U|261
8WHX|1|a|G|262
8WHX|1|a|A|263
8WHX|1|a|U|264
8WHX|1|a|G|265
8WHX|1|a|G|266
8WHX|1|a|C|267
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain r
- 30S ribosomal protein S17
- Chain u
- 30S ribosomal protein S20
Coloring options: