HL_8WHY_004

3D structure

PDB id

8WHY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AGUGAUGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WHY_004 not in the Motif Atlas

Homologous match to HL_4WF9_004

Geometric discrepancy: 0.1948

The information below is about HL_4WF9_004

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8WHY|1|A|A|134
8WHY|1|A|G|135
8WHY|1|A|U|136
8WHY|1|A|G|137
8WHY|1|A|A|138
8WHY|1|A|U|139
8WHY|1|A|G|140
8WHY|1|A|U|141

Current chains

Chain A

23S rRNA

Nearby chains

Chain W

50S ribosomal protein L23