HL_8WHY_013

3D structure

PDB id

8WHY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUGAGAGCC

Length

9 nucleotides

Bulged bases

8WHY|1|A|G|411, 8WHY|1|A|A|412, 8WHY|1|A|G|413

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WHY_013 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.0827

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

8WHY|1|A|G|409
8WHY|1|A|U|410
8WHY|1|A|G|411
8WHY|1|A|A|412
8WHY|1|A|G|413
8WHY|1|A|A|414
8WHY|1|A|G|415
8WHY|1|A|C|416
8WHY|1|A|C|417

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L4

Chain X

50S ribosomal protein L24