HL_8WHY_015

3D structure

PDB id

8WHY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGACCACC

Length

8 nucleotides

Bulged bases

8WHY|1|A|G|499

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WHY_015 not in the Motif Atlas

Homologous match to HL_7A0S_014

Geometric discrepancy: 0.0963

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8WHY|1|A|G|498
8WHY|1|A|G|499
8WHY|1|A|A|500
8WHY|1|A|C|501
8WHY|1|A|C|502
8WHY|1|A|A|503
8WHY|1|A|C|504
8WHY|1|A|C|505

Current chains

Chain A

23S rRNA

Nearby chains

Chain O

50S ribosomal protein L15