HL_8WHY_028

3D structure

PDB id

8WHY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCACAG

Length

6 nucleotides

Bulged bases

8WHY|1|A|C|1004

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WHY_028 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.2504

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8WHY|1|A|C|1001
8WHY|1|A|C|1002
8WHY|1|A|A|1003
8WHY|1|A|C|1004
8WHY|1|A|A|1005
8WHY|1|A|G|1006

Current chains

Chain A

23S rRNA

Nearby chains