HL_8WHY_051

3D structure

PDB id

8WHY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

8WHY|1|A|A|2137

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WHY_051 not in the Motif Atlas

Geometric match to HL_5TBW_049

Geometric discrepancy: 0.1325

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8WHY|1|A|G|2134
8WHY|1|A|U|2135
8WHY|1|A|A|2136
8WHY|1|A|A|2137
8WHY|1|A|C|2138
8WHY|1|A|U|2139
8WHY|1|A|A|2140
8WHY|1|A|U|2141
8WHY|1|A|A|2142
8WHY|1|A|A|2143
8WHY|1|A|C|2144

Current chains

Chain A

23S rRNA

Nearby chains