HL_8WHY_057

3D structure

PDB id

8WHY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUAAAAUGUAACG

Length

13 nucleotides

Bulged bases

8WHY|1|A|A|2492, 8WHY|1|A|C|2499

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WHY_057 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.0918

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

8WHY|1|A|C|2488
8WHY|1|A|U|2489
8WHY|1|A|A|2490
8WHY|1|A|A|2491
8WHY|1|A|A|2492
8WHY|1|A|A|2493
8WHY|1|A|U|2494
8WHY|1|A|G|2495
8WHY|1|A|U|2496
8WHY|1|A|A|2497
8WHY|1|A|A|2498
8WHY|1|A|C|2499
8WHY|1|A|G|2500

Current chains

Chain A

23S rRNA

Nearby chains

Chain Z

50S ribosomal protein L27