HL_8WI7_069

3D structure

PDB id

8WI7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, bS1 and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

8WI7|1|A|G|2975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WI7_069 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.1361

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

8WI7|1|A|C|2969
8WI7|1|A|U|2970
8WI7|1|A|G|2971
8WI7|1|A|A|2972
8WI7|1|A|A|2973
8WI7|1|A|A|2974
8WI7|1|A|G|2975
8WI7|1|A|C|2976
8WI7|1|A|A|2977
8WI7|1|A|U|2978
8WI7|1|A|C|2979
8WI7|1|A|U|2980
8WI7|1|A|A|2981
8WI7|1|A|A|2982
8WI7|1|A|G|2983

Current chains

Chain A

23S rRNA

Nearby chains

Chain I

50S ribosomal protein L6