HL_8WIB_048

3D structure

PDB id

8WIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUUACUAAAAA

Length

11 nucleotides

Bulged bases

8WIB|1|A|A|1997, 8WIB|1|A|C|1998, 8WIB|1|A|U|1999, 8WIB|1|A|A|2003

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WIB_048 not in the Motif Atlas

Homologous match to HL_4WF9_043

Geometric discrepancy: 0.1028

The information below is about HL_4WF9_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87681.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8WIB|1|A|U|1994
8WIB|1|A|U|1995
8WIB|1|A|U|1996
8WIB|1|A|A|1997
8WIB|1|A|C|1998
8WIB|1|A|U|1999
8WIB|1|A|A|2000
8WIB|1|A|A|2001
8WIB|1|A|A|2002
8WIB|1|A|A|2003
8WIB|1|A|A|2004

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L34

Chain E

50S ribosomal protein L2