HL_8WIB_069

3D structure

PDB id

8WIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

8WIB|1|A|G|2975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WIB_069 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.1277

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

8WIB|1|A|C|2969
8WIB|1|A|U|2970
8WIB|1|A|G|2971
8WIB|1|A|A|2972
8WIB|1|A|A|2973
8WIB|1|A|A|2974
8WIB|1|A|G|2975
8WIB|1|A|C|2976
8WIB|1|A|A|2977
8WIB|1|A|U|2978
8WIB|1|A|C|2979
8WIB|1|A|U|2980
8WIB|1|A|A|2981
8WIB|1|A|A|2982
8WIB|1|A|G|2983

Current chains

Chain A

23S rRNA

Nearby chains

Chain I

50S ribosomal protein L6