HL_8WIB_083

3D structure

PDB id

8WIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGUGAUGGC

Length

9 nucleotides

Bulged bases

8WIB|1|a|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WIB_083 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.1068

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_36455.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8WIB|1|a|G|259
8WIB|1|a|G|260
8WIB|1|a|U|261
8WIB|1|a|G|262
8WIB|1|a|A|263
8WIB|1|a|U|264
8WIB|1|a|G|265
8WIB|1|a|G|266
8WIB|1|a|C|267

Current chains

Chain a

16S rRNA

Nearby chains

Chain r

30S ribosomal protein S17

Chain u

30S ribosomal protein S20