HL_8WIC_044

3D structure

PDB id

8WIC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AGAGAAU

Length

7 nucleotides

Bulged bases

8WIC|1|A|A|1852

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WIC_044 not in the Motif Atlas

Homologous match to HL_5J7L_174

Geometric discrepancy: 0.1239

The information below is about HL_5J7L_174

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8WIC|1|A|A|1848
8WIC|1|A|G|1849
8WIC|1|A|A|1850
8WIC|1|A|G|1851
8WIC|1|A|A|1852
8WIC|1|A|A|1853
8WIC|1|A|U|1854

Current chains

Chain A

23S rRNA

Nearby chains