HL_8WIC_048

3D structure

PDB id

8WIC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUUACUAAAAA

Length

11 nucleotides

Bulged bases

8WIC|1|A|A|1997, 8WIC|1|A|C|1998, 8WIC|1|A|U|1999, 8WIC|1|A|A|2003

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WIC_048 not in the Motif Atlas

Homologous match to HL_4WF9_043

Geometric discrepancy: 0.1028

The information below is about HL_4WF9_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01962.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

8WIC|1|A|U|1994
8WIC|1|A|U|1995
8WIC|1|A|U|1996
8WIC|1|A|A|1997
8WIC|1|A|C|1998
8WIC|1|A|U|1999
8WIC|1|A|A|2000
8WIC|1|A|A|2001
8WIC|1|A|A|2002
8WIC|1|A|A|2003
8WIC|1|A|A|2004

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L34

Chain E

50S ribosomal protein L2