HL_8WIC_069

3D structure

PDB id

8WIC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

8WIC|1|A|G|2975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WIC_069 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.1278

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

8WIC|1|A|C|2969
8WIC|1|A|U|2970
8WIC|1|A|G|2971
8WIC|1|A|A|2972
8WIC|1|A|A|2973
8WIC|1|A|A|2974
8WIC|1|A|G|2975
8WIC|1|A|C|2976
8WIC|1|A|A|2977
8WIC|1|A|U|2978
8WIC|1|A|C|2979
8WIC|1|A|U|2980
8WIC|1|A|A|2981
8WIC|1|A|A|2982
8WIC|1|A|G|2983

Current chains

Chain A

23S rRNA

Nearby chains

Chain I

50S ribosomal protein L6