HL_8WID_015
3D structure
- PDB id
- 8WID (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome, E- tRNA and RafH.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CGGUGGAAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8WID_015 not in the Motif Atlas
- Homologous match to HL_4LFB_015
- Geometric discrepancy: 0.0982
- The information below is about HL_4LFB_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_38491.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
8WID|1|a|C|669
8WID|1|a|G|670
8WID|1|a|G|671
8WID|1|a|U|672
8WID|1|a|G|673
8WID|1|a|G|674
8WID|1|a|A|675
8WID|1|a|A|676
8WID|1|a|U|677
8WID|1|a|G|678
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain b
- Transfer RNA; tRNA
- Chain h
- 30S ribosomal protein S7
- Chain l
- 30S ribosomal protein S11
- Chain w
- Ribosome hibernation promotion factor RafH
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