HL_8WIF_017

3D structure

PDB id

8WIF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAUUAGAUACC

Length

11 nucleotides

Bulged bases

8WIF|1|a|U|773

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WIF_017 not in the Motif Atlas

Homologous match to HL_5J7L_017

Geometric discrepancy: 0.1071

The information below is about HL_5J7L_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

8WIF|1|a|G|766
8WIF|1|a|A|767
8WIF|1|a|U|768
8WIF|1|a|U|769
8WIF|1|a|A|770
8WIF|1|a|G|771
8WIF|1|a|A|772
8WIF|1|a|U|773
8WIF|1|a|A|774
8WIF|1|a|C|775
8WIF|1|a|C|776

Current chains

Chain a

16S rRNA

Nearby chains

Chain l

30S ribosomal protein S11

Chain w

Ribosome hibernation promotion factor RafH