HL_8WV1_030

3D structure

PDB id

8WV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.99 Å

Loop

Sequence

GGUCGUC

Length

7 nucleotides

Bulged bases

8WV1|1|A|G|1371, 8WV1|1|A|U|1375

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WV1_030 not in the Motif Atlas

Homologous match to HL_7A0S_033

Geometric discrepancy: 0.1298

The information below is about HL_7A0S_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

8WV1|1|A|G|1370
8WV1|1|A|G|1371
8WV1|1|A|U|1372
8WV1|1|A|C|1373
8WV1|1|A|G|1374
8WV1|1|A|U|1375
8WV1|1|A|C|1376

Current chains

Chain A

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L17

Chain R

50S ribosomal protein L22