HL_8WV1_047

3D structure

PDB id

8WV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.99 Å

Loop

Sequence

CUCCGG

Length

6 nucleotides

Bulged bases

8WV1|1|A|C|2167, 8WV1|1|A|C|2168

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WV1_047 not in the Motif Atlas

Homologous match to HL_9DFE_049

Geometric discrepancy: 0.3255

The information below is about HL_9DFE_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8WV1|1|A|C|2165
8WV1|1|A|U|2166
8WV1|1|A|C|2167
8WV1|1|A|C|2168
8WV1|1|A|G|2169
8WV1|1|A|G|2170

Current chains

Chain A

23S rRNA

Nearby chains

Chain a

Large subunit ribosomal RNA; LSU rRNA