HL_8WV1_080
3D structure
- PDB id
- 8WV1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.99 Å
Loop
- Sequence
- UAUUGAAGCA
- Length
- 10 nucleotides
- Bulged bases
- 8WV1|1|a|C|597
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8WV1_080 not in the Motif Atlas
- Homologous match to HL_9DFE_016
- Geometric discrepancy: 0.1911
- The information below is about HL_9DFE_016
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.2
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
8WV1|1|a|U|589
8WV1|1|a|A|590
8WV1|1|a|U|591
8WV1|1|a|U|592
8WV1|1|a|G|593
8WV1|1|a|A|594
8WV1|1|a|A|595
8WV1|1|a|G|596
8WV1|1|a|C|597
8WV1|1|a|A|598
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 5
- 50S ribosomal protein L32
- Chain d
- 50S ribosomal protein L3
- Chain k
- 50S ribosomal protein L15
- Chain q
- 50S ribosomal protein L21
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