HL_8WV1_095

3D structure

PDB id

8WV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.99 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WV1_095 not in the Motif Atlas

Homologous match to HL_7A0S_032

Geometric discrepancy: 0.165

The information below is about HL_7A0S_032

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.4

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

137

Unit IDs

8WV1|1|a|G|1327
8WV1|1|a|U|1328
8WV1|1|a|G|1329
8WV1|1|a|A|1330
8WV1|1|a|G|1331
8WV1|1|a|A|1332
8WV1|1|a|A|1333
8WV1|1|a|U|1334
8WV1|1|a|C|1335

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L17

Chain r

50S ribosomal protein L22