HL_8WV1_099

3D structure

PDB id

8WV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.99 Å

Loop

Sequence

CAUGGACG

Length

8 nucleotides

Bulged bases

8WV1|1|a|A|1500, 8WV1|1|a|U|1501

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WV1_099 not in the Motif Atlas

Homologous match to HL_9DFE_035

Geometric discrepancy: 0.2914

The information below is about HL_9DFE_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_00557.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8WV1|1|a|C|1499
8WV1|1|a|A|1500
8WV1|1|a|U|1501
8WV1|1|a|G|1502
8WV1|1|a|G|1503
8WV1|1|a|A|1504
8WV1|1|a|C|1505
8WV1|1|a|G|1506

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L17