HL_8WV1_102

3D structure

PDB id

8WV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.99 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

8WV1|1|a|A|1660, 8WV1|1|a|A|1662, 8WV1|1|a|A|1664

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WV1_102 not in the Motif Atlas

Homologous match to HL_4WF9_038

Geometric discrepancy: 0.1647

The information below is about HL_4WF9_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

8WV1|1|a|C|1658
8WV1|1|a|G|1659
8WV1|1|a|A|1660
8WV1|1|a|C|1661
8WV1|1|a|A|1662
8WV1|1|a|C|1663
8WV1|1|a|A|1664
8WV1|1|a|G|1665

Current chains

Chain a

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L34

Chain r

50S ribosomal protein L22