HL_8WV1_115

3D structure

PDB id

8WV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.99 Å

Loop

Sequence

GACGGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WV1_115 not in the Motif Atlas

Homologous match to HL_5J7L_219

Geometric discrepancy: 0.4833

The information below is about HL_5J7L_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50860.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8WV1|1|a|G|2316
8WV1|1|a|A|2317
8WV1|1|a|C|2318
8WV1|1|a|G|2319
8WV1|1|a|G|2320
8WV1|1|a|A|2321
8WV1|1|a|A|2322
8WV1|1|a|A|2323
8WV1|1|a|U|2324

Current chains

Chain a

23S rRNA

Nearby chains

Chain f

50S ribosomal protein L5