HL_8WV1_122

3D structure

PDB id

8WV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.99 Å

Loop

Sequence

C(2MU)GUUCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 2MU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WV1_122 not in the Motif Atlas

Homologous match to HL_9DFE_060

Geometric discrepancy: 0.2196

The information below is about HL_9DFE_060

Detailed Annotation

LSU A loop

Broad Annotation

LSU A loop

Motif group

HL_48677.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

24

Unit IDs

8WV1|1|a|C|2563
8WV1|1|a|2MU|2564
8WV1|1|a|G|2565
8WV1|1|a|U|2566
8WV1|1|a|U|2567
8WV1|1|a|C|2568
8WV1|1|a|G|2569

Current chains

Chain a

23S rRNA

Nearby chains