HL_8XSX_026

3D structure

PDB id

8XSX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

8XSX|1|L5|U|1596, 8XSX|1|L5|A|1600

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XSX_026 not in the Motif Atlas

Homologous match to HL_5TBW_020

Geometric discrepancy: 0.0635

The information below is about HL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

8XSX|1|L5|A|1593
8XSX|1|L5|C|1594
8XSX|1|L5|G|1595
8XSX|1|L5|U|1596
8XSX|1|L5|G|1597
8XSX|1|L5|C|1598
8XSX|1|L5|A|1599
8XSX|1|L5|A|1600
8XSX|1|L5|A|1601
8XSX|1|L5|U|1602

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LP

60S ribosomal protein L17

Chain Lj

60S ribosomal protein L37