HL_8XSX_034

3D structure

PDB id

8XSX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UGUAACAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XSX_034 not in the Motif Atlas

Homologous match to HL_8C3A_028

Geometric discrepancy: 0.1584

The information below is about HL_8C3A_028

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8XSX|1|L5|U|2006
8XSX|1|L5|G|2007
8XSX|1|L5|U|2008
8XSX|1|L5|A|2009
8XSX|1|L5|A|2010
8XSX|1|L5|C|2011
8XSX|1|L5|A|2012
8XSX|1|L5|A|2013

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CB

Elongation factor 2

Chain Lm

Ubiquitin-60S ribosomal protein L40

Chain Ls

Large ribosomal subunit protein uL10