3D structure

PDB id
8XSX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
AUUGAUAGCU
Length
10 nucleotides
Bulged bases
8XSX|1|S2|U|1300, 8XSX|1|S2|G|1302
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8XSX_112 not in the Motif Atlas
Homologous match to HL_8C3A_218
Geometric discrepancy: 0.1425
The information below is about HL_8C3A_218
Detailed Annotation
Anticodon loop related
Broad Annotation
Anticodon loop related
Motif group
HL_81538.1
Basepair signature
cWW-tSH-F-F-F-F
Number of instances in this motif group
15

Unit IDs

8XSX|1|S2|A|1295
8XSX|1|S2|U|1296
8XSX|1|S2|U|1297
8XSX|1|S2|G|1298
8XSX|1|S2|A|1299
8XSX|1|S2|U|1300
8XSX|1|S2|A|1301
8XSX|1|S2|G|1302
8XSX|1|S2|C|1303
8XSX|1|S2|U|1304

Current chains

Chain S2
18S rRNA

Nearby chains

Chain L5
Large subunit ribosomal RNA; LSU rRNA
Chain SP
40S ribosomal protein S15
Chain Sd
40S ribosomal protein S29
Chain Sf
Ubiquitin-40S ribosomal protein S27a

Coloring options:


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