HL_8XSY_054

3D structure

PDB id

8XSY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, e-tRNA and CCDC124 (40S head Swivelled)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUUAAUUAAAA

Length

11 nucleotides

Bulged bases

8XSY|1|L5|A|3642, 8XSY|1|L5|A|3643, 8XSY|1|L5|U|3644, 8XSY|1|L5|A|3648

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XSY_054 not in the Motif Atlas

Homologous match to HL_5TBW_046

Geometric discrepancy: 0.172

The information below is about HL_5TBW_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.6

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

8XSY|1|L5|U|3639
8XSY|1|L5|U|3640
8XSY|1|L5|U|3641
8XSY|1|L5|A|3642
8XSY|1|L5|A|3643
8XSY|1|L5|U|3644
8XSY|1|L5|U|3645
8XSY|1|L5|A|3646
8XSY|1|L5|A|3647
8XSY|1|L5|A|3648
8XSY|1|L5|A|3649

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Lj

60S ribosomal protein L37