HL_8XSY_057

3D structure

PDB id

8XSY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, e-tRNA and CCDC124 (40S head Swivelled)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

8XSY|1|L5|A|3760

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XSY_057 not in the Motif Atlas

Homologous match to HL_8C3A_049

Geometric discrepancy: 0.1134

The information below is about HL_8C3A_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8XSY|1|L5|G|3757
8XSY|1|L5|U|3758
8XSY|1|L5|A|3759
8XSY|1|L5|A|3760
8XSY|1|L5|C|3761
8XSY|1|L5|U|3762
8XSY|1|L5|A|3763
8XSY|1|L5|U|3764
8XSY|1|L5|G|3765
8XSY|1|L5|A|3766
8XSY|1|L5|C|3767

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CE

Coiled-coil domain-containing protein 124

Chain S2

Small subunit ribosomal RNA; SSU rRNA