HL_8XSZ_029

3D structure

PDB id

8XSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

8XSZ|1|L5|U|1596, 8XSZ|1|L5|A|1600, 8XSZ|1|L5|A|1601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XSZ_029 not in the Motif Atlas

Homologous match to HL_5TBW_020

Geometric discrepancy: 0.0778

The information below is about HL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

8XSZ|1|L5|A|1593
8XSZ|1|L5|C|1594
8XSZ|1|L5|G|1595
8XSZ|1|L5|U|1596
8XSZ|1|L5|G|1597
8XSZ|1|L5|C|1598
8XSZ|1|L5|A|1599
8XSZ|1|L5|A|1600
8XSZ|1|L5|A|1601
8XSZ|1|L5|U|1602

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LP

60S ribosomal protein L17

Chain Lj

60S ribosomal protein L37