HL_8XSZ_037

3D structure

PDB id

8XSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGUAACAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XSZ_037 not in the Motif Atlas

Homologous match to HL_8C3A_028

Geometric discrepancy: 0.1857

The information below is about HL_8C3A_028

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8XSZ|1|L5|U|2006
8XSZ|1|L5|G|2007
8XSZ|1|L5|U|2008
8XSZ|1|L5|A|2009
8XSZ|1|L5|A|2010
8XSZ|1|L5|C|2011
8XSZ|1|L5|A|2012
8XSZ|1|L5|A|2013

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Lm

Ubiquitin-60S ribosomal protein L40

Chain Ls

Large ribosomal subunit protein uL10

Chain Lt

60S ribosomal protein L12