3D structure

PDB id
8XSZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
AGGUGAAAUU
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8XSZ_108 not in the Motif Atlas
Homologous match to HL_8C3A_211
Geometric discrepancy: 0.0759
The information below is about HL_8C3A_211
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75293.3
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
13

Unit IDs

8XSZ|1|S2|A|957
8XSZ|1|S2|G|958
8XSZ|1|S2|G|959
8XSZ|1|S2|U|960
8XSZ|1|S2|G|961
8XSZ|1|S2|A|962
8XSZ|1|S2|A|963
8XSZ|1|S2|A|964
8XSZ|1|S2|U|965
8XSZ|1|S2|U|966

Current chains

Chain S2
18S rRNA

Nearby chains

Chain CE
mRNA
Chain L5
Large subunit ribosomal RNA; LSU rRNA
Chain SO
40S ribosomal protein S14

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