HL_8XT0_016

3D structure

PDB id

8XT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 5um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGUUCAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XT0_016 not in the Motif Atlas

Homologous match to HL_6PRV_002

Geometric discrepancy: 0.1912

The information below is about HL_6PRV_002

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8XT0|1|L1|C|532
8XT0|1|L1|G|533
8XT0|1|L1|U|534
8XT0|1|L1|U|535
8XT0|1|L1|C|536
8XT0|1|L1|A|537
8XT0|1|L1|A|538
8XT0|1|L1|G|539

Current chains

Chain L1

16s rRNA

Nearby chains

Chain L4

Large ribosomal subunit protein mL54

Chain LK

Large ribosomal subunit protein uL11m