HL_8XT0_026

3D structure

PDB id

8XT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 5um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUUAAAUAG

Length

9 nucleotides

Bulged bases

8XT0|1|L1|U|948

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XT0_026 not in the Motif Atlas

Homologous match to HL_7A0S_048

Geometric discrepancy: 0.2124

The information below is about HL_7A0S_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61418.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

8XT0|1|L1|C|942
8XT0|1|L1|U|943
8XT0|1|L1|U|944
8XT0|1|L1|A|945
8XT0|1|L1|A|946
8XT0|1|L1|A|947
8XT0|1|L1|U|948
8XT0|1|L1|A|949
8XT0|1|L1|G|950

Current chains

Chain L1

16s rRNA

Nearby chains

Chain LN

Large ribosomal subunit protein uL14m

Chain S1

Small subunit ribosomal RNA; SSU rRNA