HL_8XT0_050

3D structure

PDB id

8XT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 5um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUGUAAAAAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XT0_050 not in the Motif Atlas

Geometric match to HL_4LFB_015

Geometric discrepancy: 0.2186

The information below is about HL_4LFB_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

8XT0|1|S1|U|342
8XT0|1|S1|U|343
8XT0|1|S1|G|344
8XT0|1|S1|U|345
8XT0|1|S1|A|346
8XT0|1|S1|A|347
8XT0|1|S1|A|348
8XT0|1|S1|A|349
8XT0|1|S1|A|350
8XT0|1|S1|A|351

Current chains

Chain S1

12s rRNA

Nearby chains

Chain SG

Small ribosomal subunit protein uS7m

Chain SK

Small ribosomal subunit protein uS11m

Chain SW

Small ribosomal subunit protein bS21m