HL_8XT0_052
3D structure
- PDB id
- 8XT0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 55S mitoribosome with 5um Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GAUUAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 8XT0|1|S1|U|434
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8XT0_052 not in the Motif Atlas
- Homologous match to HL_5J7L_017
- Geometric discrepancy: 0.0851
- The information below is about HL_5J7L_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.5
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
8XT0|1|S1|G|427
8XT0|1|S1|A|428
8XT0|1|S1|U|429
8XT0|1|S1|U|430
8XT0|1|S1|A|431
8XT0|1|S1|G|432
8XT0|1|S1|A|433
8XT0|1|S1|U|434
8XT0|1|S1|A|435
8XT0|1|S1|C|436
8XT0|1|S1|C|437
Current chains
- Chain S1
- 12s rRNA
Nearby chains
- Chain L1
- Large subunit ribosomal RNA; LSU rRNA
- Chain SG
- Small ribosomal subunit protein uS7m
- Chain SK
- Small ribosomal subunit protein uS11m
- Chain SW
- Small ribosomal subunit protein bS21m
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