HL_8XT2_009

3D structure

PDB id

8XT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 10uM Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGUAGCAAAA

Length

10 nucleotides

Bulged bases

8XT2|1|L1|A|287, 8XT2|1|L1|A|291

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XT2_009 not in the Motif Atlas

Homologous match to HL_7RQB_023

Geometric discrepancy: 0.0908

The information below is about HL_7RQB_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.6

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

6

Unit IDs

8XT2|1|L1|U|284
8XT2|1|L1|G|285
8XT2|1|L1|U|286
8XT2|1|L1|A|287
8XT2|1|L1|G|288
8XT2|1|L1|C|289
8XT2|1|L1|A|290
8XT2|1|L1|A|291
8XT2|1|L1|A|292
8XT2|1|L1|A|293

Current chains

Chain L1

16s rRNA

Nearby chains

Chain LC

Large ribosomal subunit protein uL3m

Chain LV

39S ribosomal protein L22, mitochondrial

Chain Lh

Large ribosomal subunit protein bL34m