HL_8XT2_026

3D structure

PDB id

8XT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 10uM Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUUAAAUAG

Length

9 nucleotides

Bulged bases

8XT2|1|L1|U|948

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XT2_026 not in the Motif Atlas

Homologous match to HL_7A0S_048

Geometric discrepancy: 0.2252

The information below is about HL_7A0S_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61418.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

8XT2|1|L1|C|942
8XT2|1|L1|U|943
8XT2|1|L1|U|944
8XT2|1|L1|A|945
8XT2|1|L1|A|946
8XT2|1|L1|A|947
8XT2|1|L1|U|948
8XT2|1|L1|A|949
8XT2|1|L1|G|950

Current chains

Chain L1

16s rRNA

Nearby chains

Chain LN

Large ribosomal subunit protein uL14m

Chain S1

Small subunit ribosomal RNA; SSU rRNA