HL_8XT3_033

3D structure

PDB id

8XT3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 39S mitoribosome with 10uM Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUAACU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XT3_033 not in the Motif Atlas

Geometric match to HL_5D5L_001

Geometric discrepancy: 0.0822

The information below is about HL_5D5L_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8XT3|1|L1|A|1232
8XT3|1|L1|U|1233
8XT3|1|L1|A|1234
8XT3|1|L1|A|1235
8XT3|1|L1|C|1236
8XT3|1|L1|U|1237

Current chains

Chain L1

16s rRNA

Nearby chains

Chain Lg

Large ribosomal subunit protein bL33m

Chain Li

Large ribosomal subunit protein bL35m