HL_8XT3_042

3D structure

PDB id

8XT3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 39S mitoribosome with 10uM Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUAAAA

Length

6 nucleotides

Bulged bases

8XT3|1|L2|U|1614

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XT3_042 not in the Motif Atlas

Geometric match to HL_5B63_003

Geometric discrepancy: 0.1894

The information below is about HL_5B63_003

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

8XT3|1|L2|U|1613
8XT3|1|L2|U|1614
8XT3|1|L2|A|1615
8XT3|1|L2|A|1616
8XT3|1|L2|A|1621
8XT3|1|L2|A|1622

Current chains

Chain L2

Val tRNA

Nearby chains

Chain LR

Mitochondrial ribosomal protein L18, isoform CRA_b

Chain Ll

Large ribosomal subunit protein mL38