HL_8XU8_016

3D structure

PDB id

8XU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

8XU8|1|2|G|765, 8XU8|1|2|U|767

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XU8_016 not in the Motif Atlas

Homologous match to HL_8C3A_208

Geometric discrepancy: 0.3221

The information below is about HL_8C3A_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

8XU8|1|2|U|764
8XU8|1|2|G|765
8XU8|1|2|U|766
8XU8|1|2|U|767
8XU8|1|2|C|768
8XU8|1|2|A|769
8XU8|1|2|A|770
8XU8|1|2|A|771
8XU8|1|2|G|772

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SS

Small ribosomal subunit protein eS4A

Chain SW

Small ribosomal subunit protein uS4A

Chain Sd

Small ribosomal subunit protein eS24A