HL_8XU8_019

3D structure

PDB id

8XU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XU8_019 not in the Motif Atlas

Homologous match to HL_8C3A_211

Geometric discrepancy: 0.1914

The information below is about HL_8C3A_211

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

8XU8|1|2|A|900
8XU8|1|2|G|901
8XU8|1|2|G|902
8XU8|1|2|U|903
8XU8|1|2|G|904
8XU8|1|2|A|905
8XU8|1|2|A|906
8XU8|1|2|A|907
8XU8|1|2|U|908
8XU8|1|2|U|909

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SB

Small ribosomal subunit protein uS7

Chain SQ

Small ribosomal subunit protein eS1A

Chain SZ

Small ribosomal subunit protein uS11B