HL_8XU8_118
3D structure
- PDB id
- 8XU8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GUUAUCUUU
- Length
- 9 nucleotides
- Bulged bases
- 8XU8|1|A|U|1687
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8XU8_118 not in the Motif Atlas
- Homologous match to HL_8CRE_036
- Geometric discrepancy: 0.209
- The information below is about HL_8CRE_036
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- Pseudoknot geometry
- Motif group
- HL_77082.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
8XU8|1|A|G|1680
8XU8|1|A|U|1681
8XU8|1|A|U|1682
8XU8|1|A|A|1683
8XU8|1|A|U|1684
8XU8|1|A|C|1685
8XU8|1|A|U|1686
8XU8|1|A|U|1687
8XU8|1|A|U|1688
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain T
- Large ribosomal subunit protein eL19A
- Chain W
- Large ribosomal subunit protein eL22A
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