HL_8XXL_009
3D structure
- PDB id
- 8XXL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 40S ribosome with PDCD4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CCUGAGAAACGG
- Length
- 12 nucleotides
- Bulged bases
- 8XXL|1|S2|G|451
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8XXL_009 not in the Motif Atlas
- Homologous match to HL_8C3A_201
- Geometric discrepancy: 0.0636
- The information below is about HL_8C3A_201
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8XXL|1|S2|C|441
8XXL|1|S2|C|442
8XXL|1|S2|U|443
8XXL|1|S2|G|444
8XXL|1|S2|A|445
8XXL|1|S2|G|446
8XXL|1|S2|A|447
8XXL|1|S2|A|448
8XXL|1|S2|A|449
8XXL|1|S2|C|450
8XXL|1|S2|G|451
8XXL|1|S2|G|452
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SE
- 40S ribosomal protein S4, X isoform
- Chain SG
- 40S ribosomal protein S6
- Chain SI
- 40S ribosomal protein S8
- Chain SY
- 40S ribosomal protein S24
Coloring options: