3D structure

PDB id
8XXM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the human 40S ribosome with PDCD4 and eIF3G
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
ACUUUAAAUCCUU
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8XXM_013 not in the Motif Atlas
Homologous match to HL_8C3A_205
Geometric discrepancy: 0.1558
The information below is about HL_8C3A_205
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_05304.2
Basepair signature
cWW-cWW-F-F-tSH-F-F-F-F-F
Number of instances in this motif group
5

Unit IDs

8XXM|1|S2|A|569
8XXM|1|S2|C|570
8XXM|1|S2|U|571
8XXM|1|S2|U|572
8XXM|1|S2|U|573
8XXM|1|S2|A|574
8XXM|1|S2|A|575
8XXM|1|S2|A|576
8XXM|1|S2|U|577
8XXM|1|S2|C|578
8XXM|1|S2|C|579
8XXM|1|S2|U|580
8XXM|1|S2|U|581

Current chains

Chain S2
18S rRNA

Nearby chains

Chain SE
40S ribosomal protein S4, X isoform
Chain SJ
40S ribosomal protein S9
Chain SY
40S ribosomal protein S24

Coloring options:


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