HL_8XXN_019

3D structure

PDB id

8XXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 43S ribosome with PDCD4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XXN_019 not in the Motif Atlas

Homologous match to HL_8C3A_211

Geometric discrepancy: 0.0956

The information below is about HL_8C3A_211

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

8XXN|1|S2|A|957
8XXN|1|S2|G|958
8XXN|1|S2|G|959
8XXN|1|S2|U|960
8XXN|1|S2|G|961
8XXN|1|S2|A|962
8XXN|1|S2|A|963
8XXN|1|S2|A|964
8XXN|1|S2|U|965
8XXN|1|S2|U|966

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SO

40S ribosomal protein S14